Stream Fish Biology
FAS 6932 - 4 Credits
Course meeting time: Lecture Monday 9:35-11:30, Wednesday 9:35-11:30
Lab: Wednesday 11:30-5:00
RECOMMENDED TEXT: J. David Allen, Stream Ecology: Structure and function of running waters. Kluwer Academic Publishers. ISBN 0412355302
OFFICE HOURS: M 1-3 or by appointment
COURSE OBJECTIVES: To become familiar with stream and river ecosystems and the important roles of these ecosystems across the landscape. To examine the physical, biological, and ecological principles that structure lotic ecosystems with particular attention to assessing human impacts on stream and river ecosystems.
CLASS FORMAT: Information will be provided through a combination of lectures, discussions, readings, and labs. Part of one session each week will generally be devoted to a discussion of natural resource issues in the news. Makeup of materials missed for legitimate reasons should be arranged with me.
ATTENDENCE: You are required to attend all lectures and labs. If you will be away from lecture or lab, arrangements must be made with me beforehand. Be on time for lecture and lab.
ACADEMIC HONESTY: As a result of completing the registration form at the University of Florida, every student has signed the following statements: “I understand that the University of Florida expects its students to be honest in all their academic work. I agree to adhere to this commitment to academic honesty and to understand that my failure to comply with this commitment may result in disciplinary action up to and including expulsion from the University.”
EXAMINATIONS/GRADING: There are 500 regular points available in this course distributed as follows. There will be 2 exams: Mid-term will be worth 100 points, Final exam 100 points, writing assignments (2) will be worth 100 points each and the lab exercises will be worth a total of 100 points. Makeup exams for excused absences arranged in advance with the instructor will be scheduled and taken during the final week of classes. Detailed information regarding the writing and lab assignments will be presented at a later time.
All segments of the course must be completed to earn a final grade.
Letter Grade |
% Of Total Points |
A+ |
97% or 485 points |
|
A |
93% or 465 points |
|
A- |
90% or 450 points |
|
B+ |
87% or 435 points |
|
B |
83% or 415 points |
|
B- |
80% or 400 points |
|
C+ |
77% or 385 points |
|
C |
73% or 365 points |
|
C- |
70% or 350 points |
|
D+ |
67% or 335 points |
|
D |
63% or 315 points |
|
D- |
60% or 300 points |
|
F |
<60% or <300 points |
STUDENTS WITH DISABILITIES: Reasonable accommodations will be made for students with verifiable disabilities. To take advantage of accommodations students must register with the Dean of Students office.
This is tentative and subject to change, check this page for frequent updates
|
Week |
Lecture Topic |
Readings |
Additional info |
Lab (WED) |
|
1 1-9/11 |
Introduction Water Springs |
Jackson et al. 2001 Ecol App 11:1027-1045; Postel et al. Ecolo App 10:941-948 |
Prepare info cards |
Santa Fe hike river rise |
|
2 1-16/18 |
Holiday (Monday) Stream habitat |
Allen Chapter 1,3 |
1/16 HOLIDAY- No Class |
Float trip, Santa Fe River, private outfitter, bring $5 to help cover trip cost if possible. |
|
3 1-23/25 |
Nutrient Dynamics Foodwebs and Stream ecosystem theory I |
Hoyer et al. 2004 ; Allen Chapter 2, 13 Allen Chapter 12, Vannote et al. 1980. CJFAS 37:130-137, Minshall et al. 1985. CJFAS 42: 1045-1055. |
Be prepared to discuss the Hoyer et al. paper and the Allen chapters 2, 12, 13 on Wednesday |
Coastal river trip |
|
4 1-30/ 2-1 |
Stream ecosystem theory II Stream ecosystem theory III |
Discussion of RCC papers from last week on Monday WEDNESDAY QUIZ - Linking lab material with lecture and readings |
Ocklawaha River | |
|
5 2-6/8 |
Florida riverine fish I Florida riverine fish II |
Poff et al. 1997 Natural Flow Regime BioScience 47:769-787 |
Discuss writing assignment 1 |
St. Johns River FL Fish |
|
6 2-13/15 |
Habitat-fish interactions Cap-recap, Depletion simulation with MCMC |
Allen Chapter 11 Intro, 11.2, Poff et al. 2003, Fitzhugh and Ricter 2004 |
Case History 1: MFL’s
|
Planning the Santa Fe Assessment(SFA) Intro capture-recapture |
|
7 2-20/22 |
Lincoln-Petersen simulation No class Wed - FLAFS |
Capture-recapture papers for reference:
|
|
NO LAB – FLAFS meeting |
|
8 2-27/ 3-1 |
Exam 1 (Monday) Continue capture-recapture discussions, Closed and open models |
|
Exam will cover material through lecture and papers on 2/13 |
SFA Removal |
|
9 3-6/8 |
Paper due for peer review Peer reviews due and discussed Visual surveys |
|
Paper due to your peer reviewer Reviews by peers due and discussed |
SFA Start capture-recapture |
|
10 3-13/15 |
SPRING BREAK NO CLASS |
SPRING BREAK NO CLASS |
SPRING BREAK NO CLASS |
SPRING BREAK NO CLASS |
|
11 3-20/22 |
Paper due and oral presentations
|
|
|
SFA Cap-recap |
|
12 3-27/29 |
Capture-recapture open model |
SFA Telemetry |
||
|
13 4-3/5 |
Predation Introduced species |
Power 1992 Ecology 73, 1675-1688; Fraser et al. 1995 Ecology 76, 1461-1472; Allen Chapter 7 |
SFA
|
|
|
14 4-10/12 |
Trophic ecology |
Winemiller LARS symposium, Allen Chapter 6 |
|
SFA- Last trip to the Santa Fe |
|
15 4-17/19 |
Analyze capture-recapture data part 1 | Bring your laptop! | Bring your laptop! | Analyze capture-recapture data part 2 |
|
16 4-24/26 |
Diversity indicies |
Bring your laptop! |
Bring your laptop! Writing assignment 2 due April 26 |
Diversity indicies and class evaluations |
READING ASSIGNMENTS: Readings recommended on each topic should be read prior to class so that the topic can be discussed.
Lab information
Updates on lab activities will be provided during the Monday lecture. Lab activities are often weather or river stage dependent so we must be flexible in our plans.
What to bring with you in lab:
Field notebook and pencils
Water
Lunch and snacks (coolers provided)
Sunscreen
Raingear
Change of clothes
Swimsuit (depending on activity)
Towel
Hat
Mask, snorkel, fins (if you have them)
Long socks (for waders)
Camera (optional)
Waterproof bag (optional)
Field clothes should be worn on field trips. Each week there is a good change of getting wet and dirty so plan accordingly with the weather. Safety is paramount in all field activities.
Labs are designed to both introduce students to a wide range of riverine ecosystems and to explore the use of various sampling methodologies for riverine fish communities. During each field trip you should take notes on what we are doing, you should also ask yourself the following:
Where are we and why are we here?
Where is the water coming from and where is it going?
What are the dominant physical characteristics (color, vegetation, floodplain, etc?)
What flora and fauna are visible and what does this tell us?