Stream Fish Biology
FAS 6932 - 4 Credits
Course meeting time: Lecture Monday 9:35-11:30,
Wednesday 9:35-11:30 (periods 3-4)
Lab: Wednesday 11:45-6:00 (periods 5-10)
LOCATION: MCCB 3096
OPTIONAL TEXT: Stream Ecology: Structure and Function of Running Waters J. D. Allan and M. M Castillo (2nd edition, 1st is fine as well) Springer
REQUIRED READING: Mirage: Florida and the Vanishing Water of the Eastern U.S. Cynthia Barnett, 2007, University of Michigan Press (~$20.00)
OFFICE HOURS: M 1:00-3:00 (location Dept of Fisheries and Aquatic Sciences) or by appointment billpine@ufl.edu or 352 392 9617 ext 270
COURSE OBJECTIVES: To become familiar with stream and river ecosystems and the important roles of these ecosystems across the landscape. To examine the physical, biological, and ecological principles that structure lotic ecosystems with particular attention to assessing human impacts on stream and river ecosystems.
CLASS FORMAT: Information will be provided through a combination of lectures, discussions, readings, and labs. Part of one session each week will generally be devoted to a discussion of natural resource issues in the news. Labs will expose student to a variety of lotic ecosystems and provide an opportunity to integrate lecture material with field conditions. Makeup of lectures, labs, assignments missed for legitimate (as identified by UF policy) reasons should be arranged with me.
ATTENDANCE: You are required to attend all lectures and labs. If you will be away from lecture or lab, arrangements must be made with me beforehand. Be on time for lecture and lab.
ACADEMIC HONESTY: As a result of completing the registration form at the University of Florida, every student has signed the following statements: “I understand that the University of Florida expects its students to be honest in all their academic work. I agree to adhere to this commitment to academic honesty and to understand that my failure to comply with this commitment may result in disciplinary action up to and including expulsion from the University.”
EXAMINATIONS/GRADING: There are 600 regular points available in this course distributed as follows. There will be 2 exams: Mid-term will be worth 150 points, Final exam 200 points, writing assignments (2) will be worth 100 points each and the lab exercises will be worth a total of 50 points. Makeup exams for excused absences arranged in advance with the instructor will be scheduled and taken during the final week of classes. Detailed information regarding the writing and lab assignments will be presented at a later time.
All segments of the course
must be completed to earn a final grade.
Letter Grade |
% Of Total Points |
|
A |
90% or 540 points |
|
B |
83% or 498 points |
|
C |
73% or 438 points |
|
D |
63% or 378 points |
|
F |
<60% or <300 points |
STUDENTS WITH DISABILITIES: Students requesting classroom accommodation must first register with the Dean of Students Office. The Dean of Students Office will provide documentation to the student who must then provide this documentation to the Instructor when requesting accommodation.
This is tentative and subject to change, check this page for frequent updates
Note: Due to prior travel commitments, class will not start until January 16. Makeup lecture sessions will take place in the scheduled lab time.
|
Week |
Date |
Lecture Topics |
Readings |
Other info |
Lab (Wednesday) |
|
1
|
Jan 7 and 9 |
Monday: NO CLASS Wednesday: NO CLASS |
Mirage: Prologue, Ch 1, Ch 2, Ch 3 | Wednesday Lab: NO CLASS | |
| 2 | Jan 14 and 16 |
Monday: NO CLASS Wednesday: Course introduction, Foundations of Stream Ecology |
Mirage Ch 4, Ch 5, Ch 6 Ward et al. 2002. Verh Internat. Verein. Limnol. 28:443-450. |
|
Wednesday Lab: Continue lecture from class, Water and an introduction to fluvial ecosystems, discuss Mirage |
| 3 | Jan 21 and 23 |
Monday: NO CLASS UF Holiday Wednesday: NO CLASS |
Mirage Ch 7, Ch8, Ch 9 | Wednesday Lab: NO CLASS | |
|
4 |
Jan 28 and 30 |
Monday: Stream Flow Wednesday: Fluvial geomorphology |
Mirage Ch 10, Ch 11, Ch 12 | Wednesday Lab: Discuss Mirage, FL underwater journey, Hike to river rise | |
|
|
|||||
|
5 |
Feb 4 and 6 |
Monday: Abiotic environment Wednesday: Abiotic II |
Canfield and Hoyer 1988 CJFAS 45:1467-1472 |
Wednesday Lab: Ocklawaha River and Rodman Reservoir | |
|
|
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|
6 |
Feb 11 and 13 |
Monday: Guest Lecture:, 10:00,
Cynthia Barnett, Mirage author Wednesday: Primary producers and Detrital Energy
|
Jackson et al. 2001 Ecol App 11:1027-1045; Postel et al. Ecol App 10:941-948
|
|
Wednesday Lab: Upper St. Johns (tentative) |
|
7 |
Feb 18 and 20 |
Monday: Autochthonous and allochthonous production Wednesday: NO CLASS, Florida AFS Meeting
|
Kennedy and Hobbie.
2004. FW Biology 49:65-76 Cole et al. 2006. Ecological Letters 9:558-568 Lewis et al. JNABS 20:241-254 |
|
Wednesday: NO LAB, Florida AFS Meeting |
|
8 |
Feb 25 and 27 |
Monday: Trophic relationships Wednesday: Species interactions |
McIntosh and Townsend. 1996 Oecologia 108:174-181 Huryn 1998 Oecologia 115:173-183
|
Wednesday Lab: Rainbow River | |
|
|
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|
9 |
Mar 3 and 5 |
Monday: Food webs Wednesday: Exam One |
Pace et al. 1999. TREE 14:483-488 | Wednesday Lab: No Lab | |
|
10 |
March 10 and 12 |
SPRING BREAK NO CLASS |
SPRING BREAK NO CLASS |
SPRING BREAK NO CLASS |
|
|
|
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|
11
|
Mar 17 and 19 |
Monday:
Predation Wednesday: RCC, FPC |
Vannote et al. 1980. CJFAS 37:130-137 Minshall et al. 1985. CJFAS 42: 1045-1055. |
Wednesday Lab: Santa Fe assessment March 17-21 | |
|
|
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|
12 |
Mar 24 and 26 |
Monday: SDC, NFP Wednesday: 9:30 Leave for Suwannee River (meet at clubhouse) |
Poff et al. 2003 Front Ecol Environ 1:298-306 | Wednesday Lab: Lower Suwannee River NWR with Dr. John Kasbohm | |
|
|
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|
13
|
Mar 31 and April 2 |
Monday: ACF Case History
- Jerry Ziewitz USFWS-PCB Wednesday: NFP |
Wednesday Lab: No Lab, work on writing assignment 2 | ||
|
|
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| 14 | April 7 and 9 |
Monday: Fish
Habitat
Wednesday: Fish Habitat |
Rosenfield TAFS 132:953-968
|
Wednesday Lab: No Lab | |
| 15 | April 14 and 16 |
Monday: Fish
Habitat Wednesday: Management options |
Wednesday Lab: Ichetucknee River | ||
| 16 | April 21 and 23 |
Monday: AMP Wednesday: |
Wednesday Lab: Final Exam |
READING ASSIGNMENTS: Readings recommended on each topic should be read prior to class so that the topic can be discussed.
Lab information
Updates on lab activities will be provided during the Monday lecture. Lab activities are often weather or river stage dependent so we must be flexible in our plans.
What to bring with you in lab:
Field notebook and pencils
Water
Lunch and snacks (coolers provided)
Sunscreen
Raingear
Change of clothes
Swimsuit (depending on activity)
Towel
Hat
Mask, snorkel, fins (if you have them)
Long socks (for waders)
Camera (optional)
Waterproof bag (optional)
Field clothes should be worn on field trips. Each week there is a good change of getting wet and dirty so plan accordingly with the weather. Safety is paramount in all field activities.
Labs are designed to both introduce students to a wide range of riverine ecosystems and to explore the use of various sampling methodologies for riverine fish communities. During each field trip you should take notes on what we are doing, you should also ask yourself the following:
Where are we and why are we here?
Where is the water coming from and where is it going?
What are the dominant physical characteristics (color, vegetation, floodplain, etc?)
What flora and fauna are visible and what does this tell us?
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