Stream Fish Biology

FAS 6932 - 4 Credits

Course meeting time:      Lecture Monday 9:35-11:30,

                                        Wednesday 9:35-11:30  (periods 3-4)

                                        Lab: Wednesday 11:45-6:00 (periods 5-10)

LOCATION: MCCB 3096

OPTIONAL TEXT: Stream Ecology: Structure and Function of Running Waters  J. D. Allan and M. M Castillo (2nd edition, 1st is fine as well) Springer

REQUIRED READING: Mirage: Florida and the Vanishing Water of the Eastern U.S. Cynthia Barnett, 2007, University of Michigan Press (~$20.00)

OFFICE HOURS: M 1:00-3:00 (location Dept of Fisheries and Aquatic Sciences) or by appointment billpine@ufl.edu or 352 392 9617 ext 270

COURSE OBJECTIVES: To become familiar with stream and river ecosystems and the important roles of these ecosystems across the landscape.  To examine the physical, biological, and ecological principles that structure lotic ecosystems with particular attention to assessing human impacts on stream and river ecosystems.

CLASS FORMAT: Information will be provided through a combination of lectures, discussions, readings, and labs.  Part of one session each week will generally be devoted to a discussion of natural resource issues in the news.  Labs will expose student to a variety of lotic ecosystems and provide an opportunity to integrate lecture material with field conditions.  Makeup of lectures, labs, assignments missed for legitimate (as identified by UF policy) reasons should be arranged with me.

ATTENDANCE: You are required to attend all lectures and labs.  If you will be away from lecture or lab, arrangements must be made with me beforehand.  Be on time for lecture and lab.

ACADEMIC HONESTY: As a result of completing the registration form at the University of Florida, every student has signed the following statements: “I understand that the University of Florida expects its students to be honest in all their academic work. I agree to adhere to this commitment to academic honesty and to understand that my failure to comply with this commitment may result in disciplinary action up to and including expulsion from the University.”

EXAMINATIONS/GRADING: There are 600 regular points available in this course distributed as follows.  There will be 2 exams:  Mid-term will be worth 150 points, Final exam 200 points, writing assignments (2) will be worth 100 points each and the lab exercises will be worth a total of 50 points.  Makeup exams for excused absences arranged in advance with the instructor will be scheduled and taken during the final week of classes.  Detailed information regarding the writing and lab assignments will be presented at a later time.

All segments of the course must be completed to earn a final grade.  

Letter Grade

% Of Total Points

   

A

90% or 540 points

B

83% or 498 points

C

73% or 438 points

D

63% or 378 points

F

<60% or <300 points

 

STUDENTS WITH DISABILITIES: Students requesting classroom accommodation must first register with the Dean of Students Office. The Dean of Students Office will provide documentation to the student who must then provide this documentation to the Instructor when requesting accommodation.

Stream Fish Biology Schedule:  Spring, 2008

This is tentative and subject to change, check this page for frequent updates

Note: Due to prior travel commitments, class will not start until January 16.  Makeup lecture sessions will take place in the scheduled lab time.

Week

Date

Lecture Topics

Readings

Other info

Lab (Wednesday)

1

 

Jan 7 and 9 Monday: NO CLASS

Wednesday: NO CLASS

Mirage: Prologue, Ch 1, Ch 2, Ch 3   Wednesday Lab: NO CLASS
           
2 Jan 14 and 16 Monday: NO CLASS

Wednesday: Course introduction, Foundations of Stream Ecology

Mirage Ch 4, Ch 5, Ch 6

Ward et al. 2002. Verh Internat. Verein. Limnol. 28:443-450.

 

Wednesday Lab: Continue lecture from class, Water and an introduction to fluvial ecosystems, discuss Mirage

           
3 Jan 21 and 23 Monday: NO CLASS UF Holiday

Wednesday: NO CLASS

Mirage Ch 7, Ch8, Ch 9   Wednesday Lab: NO CLASS
           

4

Jan 28 and 30

Monday: Stream Flow

Wednesday: Fluvial geomorphology

Mirage Ch 10, Ch 11, Ch 12

Richter et al. 2003 Sustainable water management

Service 2004

  Wednesday Lab: Discuss Mirage, FL underwater journey, Hike to river rise
     

 

   

5

Feb 4 and 6

Monday: Abiotic environment

Wednesday: Abiotic II

 Canfield and Hoyer 1988 CJFAS 45:1467-1472

 Hoyer et al. 2004 Hydrobiologia 528:31-43

Natural Streams 1, 2

Portz and Tyus 2004

  Wednesday Lab: Ocklawaha River and Rodman Reservoir

WRITING ASSIGNMENT ONE

     

 

   

6

Feb 11 and 13 Monday: Guest Lecture:, 10:00, Cynthia Barnett, Mirage author

Wednesday: Primary producers and Detrital Energy

 

Jackson et al. 2001 Ecol App 11:1027-1045;

Postel et al. Ecol App 10:941-948

Dodds and Biggs 2002

 

 

Wednesday Lab: Upper St. Johns (tentative)
           

7

Feb 18 and 20

Monday: Autochthonous and allochthonous production

Wednesday: NO CLASS, Florida AFS Meeting

 

Kennedy and Hobbie. 2004. FW Biology 49:65-76

Cole et al. 2006. Ecological Letters 9:558-568

Lewis et al. JNABS 20:241-254

 

Wednesday: NO LAB,  Florida AFS Meeting

           

8

Feb 25 and 27 Monday: Trophic relationships

Wednesday: Species interactions

McIntosh and Townsend. 1996 Oecologia 108:174-181

Huryn 1998 Oecologia 115:173-183

 

  Wednesday Lab: Rainbow River
     

  

   

9

Mar 3 and 5 Monday: Food webs

Wednesday: Exam One

Pace et al. 1999. TREE 14:483-488   Wednesday Lab: No Lab
           

10

March 10 and 12 SPRING BREAK

NO CLASS

SPRING BREAK

NO CLASS

  SPRING BREAK

NO CLASS

 

         

11

 

Mar 17 and 19 Monday: Predation

Wednesday: RCC, FPC

 

Vannote et al. 1980. CJFAS 37:130-137

Minshall et al. 1985. CJFAS 42: 1045-1055.

Junk and Wantzen 2002

  Wednesday Lab: Santa Fe assessment March 17-21

 

         

12

Mar 24 and 26 Monday: SDC, NFP

Wednesday: 9:30 Leave for Suwannee River (meet at clubhouse)

Poff et al. 2003 Front Ecol Environ 1:298-306   Wednesday Lab:  Lower Suwannee River NWR with Dr. John Kasbohm

 

         

13

 

Mar 31 and April 2 Monday: ACF Case History - Jerry Ziewitz USFWS-PCB

Wednesday: NFP

Anderson et al. 2004

Poff et al. 1997. BioScience 47:769-787 

  Wednesday Lab: No Lab, work on writing assignment 2

 

         
14 April 7 and 9 Monday: Fish Habitat

Wednesday: Fish Habitat

Rosenfield TAFS 132:953-968

 

  Wednesday Lab: No Lab
           
15 April 14 and 16 Monday: Fish Habitat

Wednesday: Management options

    Wednesday Lab: Ichetucknee River
           
16 April 21 and 23 Monday: AMP

Wednesday:

    Wednesday Lab: Final Exam

 

READING ASSIGNMENTS: Readings recommended on each topic should be read prior to class so that the topic can be discussed.

 

Lab information

Updates on lab activities will be provided during the Monday lecture.  Lab activities are often weather or river stage dependent so we must be flexible in our plans.

What to bring with you in lab:

Field notebook and pencils

Water

Lunch and snacks (coolers provided)

Sunscreen

Raingear

Change of clothes

Swimsuit (depending on activity)

Towel

Hat

Mask, snorkel, fins (if you have them)

Long socks (for waders)

Camera (optional)

Waterproof bag (optional)

 

Field clothes should be worn on field trips.  Each week there is a good change of getting wet and dirty so plan accordingly with the weather.  Safety is paramount in all field activities.

 

Labs are designed to both introduce students to a wide range of riverine ecosystems and to explore the use of various sampling methodologies for riverine fish communities.  During each field trip you should take notes on what we are doing, you should also ask yourself the following:

 

Where are we and why are we here?

Where is the water coming from and where is it going?

What are the dominant physical characteristics (color, vegetation, floodplain, etc?)

What flora and fauna are visible and what does this tell us?

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